API for priscian/flowpipe
Flow & Mass Cytometry Analysis Pipeline
| Global functions | |
|---|---|
| .onLoad | Source code |
| CATALYST_normCytof | Source code |
| any_noncommon_descs | Source code |
| baseline_cut | Source code |
| bead_normalize | Source code |
| bead_normalize_single | Source code |
| bisect | Source code |
| compensate | Source code |
| do_differential_expression_single | Source code |
| find_plus_minus_by_channel | Source code |
| get_channels_by_sample | Source code |
| get_fcs_expression_subset | Source code |
| get_optimal_cluster_count | Source code |
| makeContrasts | Source code |
| make_clusters | Source code |
| make_metaclusters | Source code |
| make_tsne_embedding | Source code |
| make_umap_embedding | Source code |
| multisect | Source code |
| plot_channel_densities_by_sample | Source code |
| plot_common_umap_viz_single | Source code |
| print_ontologies | Source code |
| process_config_file | Source code |
| quadrisect | Source code |
| rename_fcs_parameters_name | Source code |
| rev_asinh | Source code |
| simple_FlowSOM | Source code |
| summarize_all_clusters_single | Source code |
| summarize_metadata | Source code |
| summary.pmm | Source code |
| trisect | Source code |
| visualize_channels | Source code |
