plot.mean_comparisons_model_bh_GxE: Get ggplot to visualize output from...

In priviere/PPBstats: An R package to perform analysis found within PPB programmes

Description

plot.mean_comparisons_model_bh_GxE returns ggplot to visualize outputs from mean_comparisons.check_model_bh_GxE

Usage

## S3 method for class 'mean_comparisons_model_bh_GxE'
plot(x, y = NULL,
  plot_type = c("biplot-alpha-beta", "barplot"),
  nb_parameters_per_plot = 8, ...)

Arguments

x	Output from mean_comparisons.check_model_bh_GxE for a given parameter
y	Output from mean_comparisons.check_model_bh_GxE for a given parameter
plot_type	"biplot-alpha-beta" or "barplot"
nb_parameters_per_plot	number of parameter per plot to display
...	further arguments passed to or from other methods

Details

S3 method. y can not be NULL for plot_type = "biplot-alpha-beta". See example in the book: https://priviere.github.io/PPBstats_book/family-2.html#model-2

Value

A list with ggplot object depending on plot_type. There are as many graph as needed with nb_parameters_per_plot parameters per graph.

• barplot : Letters are displayed on each bar. Parameters that do not share the same letters are different regarding type I error (alpha) and alpha correction. The error I (alpha) and the alpha correction are displayed in the title. alpha = Imp means that no differences were possible to find.

• biplot-alpha-beta : display the biplot with alpha_i on the x axis and beta_i on the y axis if x and y are coming respectively from mean_comparisons.check_model_bh_GxE for alpha and beta.

Author(s)

Pierre Riviere

See Also

mean_comparisons.check_model_bh_GxE

priviere/PPBstats documentation built on May 6, 2021, 1:20 a.m.