CodPot2tbl: A CodPot2tbl function

In prodakt/lncRna: Long Non-coding RNA Identification

A CodPot2tbl function

Description

This function reads several outputs from coding potential programs and join all tesults in table, where 0 is coding and 1 - noncoding

Usage

CodPot2tbl(
  CPC2_outfile = NULL,
  PLEK_outfile = NULL,
  FEELnc_outfile = NULL,
  CPAT_outfile = NULL,
  CPAT_cutoff = 0.364,
  CNCI_outfile = NULL,
  LncFinder_outfile = NULL,
  lncRNA_Mdeep_outfile = NULL
)

Arguments

CPC2_outfile	the output file from the CPC2 tool
PLEK_outfile	the output file from the PLEK tool
FEELnc_outfile	the output file from the FEELnc tool
CPAT_outfile	the output file from the CPAT tool
CPAT_cutoff	the cutoff value for CPAT output
CNCI_outfile	the output file from the CNCI tool
LncFinder_outfile	the output file from the LncFinder tool
lncRNA_Mdeep_outfile	the output file from the lncRNA_Mdeep tool

Examples

CodPot2tbl()

prodakt/lncRna documentation built on June 1, 2025, 1:05 p.m.