read.CPAT: A read.CPAT function

In prodakt/lncRna: Long Non-coding RNA Identification

A read.CPAT function

Description

This function reads CPAT output and list all noncoding transcripts IDs

Usage

read.CPAT(CPAT_outfile, CPAT_cutoff = 0.364)

Arguments

CPAT_outfile	is the CPAT output file (table containing 'lable' collumn inticating coding = 1 and noncoding = 0 transcripts) localization including filename
CPAT_cutoff	is the cutoff value predefined (https://cpat.readthedocs.io/en/latest/#how-to-choose-cutoff) or computed i.e. using 'CPATcutoff()' function. The default value is equal to predefined for human 0.364

Examples

read.CPAT()

prodakt/lncRna documentation built on June 1, 2025, 1:05 p.m.