strtie2expr: strtie2expr function

In prodakt/lncRna: Long Non-coding RNA Identification

strtie2expr function

Description

This function allows you to extract expression values from the stringtie output file.

Usage

strtie2expr(strdir = "stringtie/", pattern = "gtab", expunit = "FPKM")

Arguments

strdir	the directory with stringtie results (default is strdir = "stringtie/")
pattern	the pattern for stringtie uotput files (default is pattern = "gtab")

Examples

strtie2expr()
FPKM_strtie <- strtie2expr()
FPKM_strtie <- strtie2expr(strdir = "stringtie/", pattern = "gtab", expunit = "FPKM")
TPM_strtie <- strtie2expr(expunit = "TPM")

prodakt/lncRna documentation built on June 1, 2025, 1:05 p.m.