GetMatAdj: Returns the contains of the slot processing of an object of...
In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R
GetMatAdj R Documentation
Returns the contains of the slot processing of an object of
class MSnSet
Description
Returns the contains of the slot processing of an object of
class MSnSet
Usage
GetMatAdj(obj)
Arguments
obj
An object (peptides) of class MSnSet.
Value
The slot processing of obj@processingData
Author(s)
Samuel Wieczorek
Examples
data(Exp1_R25_pept, package="DAPARdata")
Xshared <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(100)],
"Protein_group_IDs", FALSE)
Xunique <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(100)],
"Protein_group_IDs", TRUE)
ll.X <- list(matWithSharedPeptides = Xshared,
matWithUniquePeptides = Xunique)
Exp1_R25_pept <- SetMatAdj(Exp1_R25_pept, ll.X)
ll.X <- GetMatAdj(Exp1_R25_pept)
prostarproteomics/DAPAR documentation built on Nov. 26, 2024, 6:32 p.m.
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| GetMatAdj | R Documentation |
Returns the contains of the slot processing of an object of
class MSnSet
Description
Returns the contains of the slot processing of an object of
class MSnSet
Usage
GetMatAdj(obj)
Arguments
obj |
An object (peptides) of class |
Value
The slot processing of obj@processingData
Author(s)
Samuel Wieczorek
Examples
data(Exp1_R25_pept, package="DAPARdata")
Xshared <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(100)],
"Protein_group_IDs", FALSE)
Xunique <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(100)],
"Protein_group_IDs", TRUE)
ll.X <- list(matWithSharedPeptides = Xshared,
matWithUniquePeptides = Xunique)
Exp1_R25_pept <- SetMatAdj(Exp1_R25_pept, ll.X)
ll.X <- GetMatAdj(Exp1_R25_pept)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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