Get_AllComparisons | R Documentation |
MSnSet
.This method returns a list of the statistical tests performed with DAPAR and
recorded in an object of class MSnSet
.
Get_AllComparisons(obj)
obj |
An object of class |
A list of two slots: logFC and P_Value
Samuel Wieczorek
data(Exp1_R25_prot, package="DAPARdata") obj <- Exp1_R25_prot[seq_len(1000)] level <- GetTypeofData(obj) metacell.mask <- match.metacell(GetMetacell(obj), "Missing", level) indices <- GetIndices_WholeMatrix(metacell.mask, op = ">=", th = 1) obj <- MetaCellFiltering(obj, indices, cmd = "delete") qData <- Biobase::exprs(obj$new) sTab <- Biobase::pData(obj$new) allComp <- limmaCompleteTest(qData, sTab) data <- list(logFC = allComp$logFC[1], P_Value = allComp$P_Value[1]) obj$new <- diffAnaSave(obj$new, allComp, data) ll <- Get_AllComparisons(obj$new)
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