Metacell_DIA_NN: Sets the metacell dataframe for datasets which are from...

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Sets the metacell dataframe for datasets which are from Dia-NN software

Description

Actually, this function uses the generic function to generate metacell info

Usage

Metacell_DIA_NN(qdata, conds, df, level = NULL)

Arguments

qdata	An object of class MSnSet
conds	xxx
df	A list of integer xxxxxxx
level	xxx

Value

xxxxx

Author(s)

Samuel Wieczorek

Examples

file <- system.file("extdata", "Exp1_R25_pept.txt", package = "DAPARdata")
data <- read.table(file, header = TRUE, sep = "\t", stringsAsFactors = FALSE)
metadataFile <- system.file("extdata", "samples_Exp1_R25.txt",
    package = "DAPARdata"
)
metadata <- read.table(metadataFile,
    header = TRUE, sep = "\t", as.is = TRUE,
    stringsAsFactors = FALSE
)
conds <- metadata$Condition
qdata <- data[seq_len(100), seq.int(from = 56, to = 61)]
df <- data[seq_len(100), seq.int(from = 43, to = 48)]
df <- Metacell_DIA_NN(qdata, conds, df, level = "peptide")

prostarproteomics/DAPAR documentation built on Oct. 11, 2024, 12:03 p.m.