SetCC: Returns the connected components

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Returns the connected components

Description

Returns the connected components

Usage

SetCC(obj, cc)

Arguments

obj	An object (peptides) of class MSnSet.
cc	The connected components list

Value

xxx

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_pept, package='DAPARdata')
Xshared <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(100)], 
"Protein_group_IDs", FALSE)
Xunique <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(100)], 
"Protein_group_IDs", TRUE)
ll.X <- list(matWithSharedPeptides = Xshared, 
matWithUniquePeptides = Xunique)
Exp1_R25_pept <- SetMatAdj(Exp1_R25_pept, ll.X)
ll1 <- get.pep.prot.cc(GetMatAdj(Exp1_R25_pept)$matWithSharedPeptides)
ll2 <- get.pep.prot.cc(
GetMatAdj(Exp1_R25_pept)$matWithUniquePeptides)
cc <- list(allPep = ll1, onlyUniquePep = ll2)
Exp1_R25_pept <- SetCC(Exp1_R25_pept, cc)

prostarproteomics/DAPAR documentation built on Nov. 26, 2024, 6:32 p.m.