histPValue_HC: Plots a histogram ov p-values

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Plots a histogram ov p-values

Description

Plots a histogram ov p-values

Usage

histPValue_HC(pval_ll, bins = 80, pi0 = 1)

Arguments

pval_ll	xxx
bins	xxx
pi0	xxx

Value

A plot

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_prot, package="DAPARdata")
obj <- Exp1_R25_prot[seq_len(100)]
level <- 'protein'
metacell.mask <- match.metacell(GetMetacell(obj), c("Missing POV", "Missing MEC"), level)
indices <- GetIndices_WholeMatrix(metacell.mask, op = ">=", th = 1)
obj <- MetaCellFiltering(obj, indices, cmd = "delete")
qData <- Biobase::exprs(obj$new)
sTab <- Biobase::pData(obj$new)
allComp <- limmaCompleteTest(qData, sTab)
histPValue_HC(allComp$P_Value[1])

prostarproteomics/DAPAR documentation built on March 28, 2024, 4:44 a.m.