metacellPerLinesHistoPerCondition_HC: Bar plot of missing values per lines and per condition

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Bar plot of missing values per lines and per condition

Description

This method plots a bar plot which represents the distribution of the number of missing values (NA) per lines (ie proteins) and per conditions.

Usage

metacellPerLinesHistoPerCondition_HC(
  obj,
  pattern = NULL,
  indLegend = "auto",
  showValues = FALSE,
  pal = NULL
)

Arguments

obj	xxx
pattern	xxx
indLegend	The indice of the column name's in Biobase::pData() tab
showValues	A logical that indicates wether numeric values should be drawn above the bars.
pal	xxx

Value

A bar plot

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_pept, package="DAPARdata")
obj <- Exp1_R25_pept
pal <- ExtendPalette(length(unique(Biobase::pData(obj)$Condition)), "Dark2")
metacellPerLinesHistoPerCondition_HC(obj, c("Missing POV", "Missing MEC"), pal = pal)
metacellPerLinesHistoPerCondition_HC(obj, "Quantified")

prostarproteomics/DAPAR documentation built on Oct. 11, 2024, 12:03 p.m.