metacellPerLinesHisto_HC: Bar plot of missing values per lines using highcharter

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Bar plot of missing values per lines using highcharter

Description

This method plots a bar plot which represents the distribution of the number of missing values (NA) per lines (ie proteins).

Usage

metacellPerLinesHisto_HC(
  obj,
  pattern = NULL,
  detailed = FALSE,
  indLegend = "auto",
  showValues = FALSE
)

Arguments

obj	xxx.
pattern	xxx
detailed	'value' or 'percent'
indLegend	The indice of the column name's in Biobase::pData() tab
showValues	A logical that indicates whether numeric values should be drawn above the bars.

Value

A bar plot

Author(s)

Florence Combes, Samuel Wieczorek

Examples

data(Exp1_R25_pept, package="DAPARdata")
obj <- Exp1_R25_pept

obj <- obj[1:10]

metacellPerLinesHisto_HC(obj, pattern = "Missing POV")

metacellPerLinesHisto_HC(obj)
metacellPerLinesHisto_HC(obj, pattern = "Quantified")
metacellPerLinesHisto_HC(obj, pattern = "Quant. by direct id")
metacellPerLinesHisto_HC(obj, pattern = "Quant. by recovery")
metacellPerLinesHisto_HC(obj, pattern = c("Quantified", "Quant. by direct id", "Quant. by recovery"))

prostarproteomics/DAPAR documentation built on June 14, 2025, 4:40 a.m.