View source: R/plots_heatmaps.R
wrapper.heatmapD | R Documentation |
heatmap.2
that displays
quantitative data in the Biobase::exprs()
table of an object of
class MSnSet
This function is a wrapper to heatmap.2
that displays
quantitative data in the Biobase::exprs()
table of an object of
class MSnSet
wrapper.heatmapD(
obj,
distance = "euclidean",
cluster = "complete",
dendro = FALSE
)
obj |
An object of class |
distance |
The distance used by the clustering algorithm to compute
the dendrogram. See |
cluster |
the clustering algorithm used to build the dendrogram.
See |
dendro |
A boolean to indicate fi the dendrogram has to be displayed |
A heatmap
Alexia Dorffer
data(Exp1_R25_pept, package="DAPARdata")
obj <- Exp1_R25_pept[seq_len(10)]
level <- 'peptide'
metacell.mask <- match.metacell(GetMetacell(obj), c("Missing POV", "Missing MEC"), level)
indices <- GetIndices_WholeLine(metacell.mask)
wrapper.heatmapD(obj)
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