API for protViz/SRMService
Report Quantitative Mass Spectrometry Data
| Global functions | |
|---|---|
| .RMD_QC1To1_Old | Source code |
| .cast_maxquant_to_wide_glf | Source code |
| .fgcz_render_One2OneReport | Source code |
| .filterEvidence | Source code |
| .filterProteinGroups | Source code |
| .findDecorrelated | Source code |
| .fixConditionMapping | Source code |
| .getLongFormat | Source code |
| .melt_maxquant_to_long_glf | Source code |
| .onAttach | Source code |
| .removeDecorrelated | Source code |
| .remove_feature_with_few | Source code |
| .reportMissing | Source code |
| .scriptCopyHelperVec | Source code |
| .transitionCorrelations | Source code |
| Annotation | Man page |
| Do2grpTtestOnMatrixAndBHcorrReturnAllInternalTrafo | Source code |
| Do2grpTtestRobustOnMatrixAndBHcorrWithThresholdAndFoldChangeAndR | Source code |
| DoCorrelationOnMatrix | Source code |
| Grp2Analysis | Man page |
| Grp2Analysis-class | Man page |
| ImputeValuesInProtMatrixForRowsWithZeros | Source code |
| MQtoMSstatsFormat | Man page Source code |
| MSstatsMapping | Man page Source code |
| NormalizeWithMedianPQMatrix | Source code |
| PeptideTable | Man page |
| PeptideTable-class | Man page |
| ProteinTable | Man page |
| ProteinTable-class | Man page |
| ProteinTableR6 | Man page |
| ProteinVariableSelect | Man page |
| QCProteinReport | Man page |
| QCProteinReport-class | Man page |
| RMD_LibraryGen_specLProzor | Man page Source code |
| RMD_MQ_Quant_2GrpAnalysis | Man page Source code |
| RMD_MQ_Quant_QCReport | Man page Source code |
| RMD_PD_Quant_2GrpAnalysis | Man page Source code |
| RMD_QC1To1_Old | Man page Source code |
| RMD_SRM_QC_Normalization | Man page Source code |
| RMD_VarSelection | Man page Source code |
| RemoveRowsWithZerosFromProtMatrix | Source code |
| RobustFtest.returnpValue | Source code |
| RobustTtest.returnpValue | Source code |
| SRMService | Man page |
| SRMService-class | Man page |
| TransitionTable | Man page |
| TransitionTable-class | Man page |
| annotationColumns | Man page |
| contrasts.fit.NA | Man page Source code |
| correlatedPeptideList | Man page |
| eb.fit | Man page Source code |
| fgcz_render_One2OneReport | Man page Source code |
| fixScaffoldQuantReport | Man page Source code |
| fix_PD_inputFiles | Man page Source code |
| genericQuantMatrixGRP2 | Man page |
| getConditionColumns | Man page Source code |
| getIDLabels | Man page Source code |
| getIntensities | Man page Source code |
| getPVals | Man page Source code |
| getRequiredColumns | Man page Source code |
| grp2PullDownExample | Man page |
| mergeLimmEBayesResult | Man page Source code |
| mqQuantMatrixGRP2 | Man page |
| multigroupEBaysQvalue | Man page Source code |
| piwotPiw | Man page Source code |
| plotNicely | Man page Source code |
| proteinColumns | Man page |
| remap_PD_ProteinTable | Man page Source code |
| transitionCorrelations | Man page Source code |
| transitionCorrelationsJack | Man page Source code |
