API for protViz/SRMService
Report Quantitative Mass Spectrometry Data

Global functions
Annotation Man page
Do2grpTtestOnMatrixAndBHcorrReturnAllInternalTrafo Source code
Do2grpTtestRobustOnMatrixAndBHcorrWithThresholdAndFoldChangeAndR Source code
DoCorrelationOnMatrix Source code
Grp2Analysis Man page
Grp2Analysis-class Man page
ImputeValuesInProtMatrixForRowsWithZeros Source code
MQtoMSstatsFormat Man page Source code
MSstatsMapping Man page Source code
NormalizeWithMedianPQMatrix Source code
PeptideTable Man page
PeptideTable-class Man page
ProteinTable Man page
ProteinTable-class Man page
ProteinTableR6 Man page
ProteinVariableSelect Man page
QCProteinReport Man page
QCProteinReport-class Man page
RMD_LibraryGen_specLProzor Man page Source code
RMD_MQ_Quant_2GrpAnalysis Man page Source code
RMD_MQ_Quant_QCReport Man page Source code
RMD_PD_Quant_2GrpAnalysis Man page Source code
RMD_QC1To1_Old Man page Source code Source code
RMD_SRM_QC_Normalization Man page Source code
RMD_VarSelection Man page Source code
RemoveRowsWithZerosFromProtMatrix Source code
RobustFtest.returnpValue Source code
RobustTtest.returnpValue Source code
SRMService Man page
SRMService-class Man page
TransitionTable Man page
TransitionTable-class Man page
annotationColumns Man page
cast_maxquant_to_wide_glf Source code
contrasts.fit.NA Man page Source code
correlatedPeptideList Man page
eb.fit Man page Source code
fgcz_render_One2OneReport Man page Source code Source code
filterEvidence Source code
filterProteinGroups Source code
findDecorrelated Source code
fixConditionMapping Source code
fixScaffoldQuantReport Man page Source code
fix_PD_inputFiles Man page Source code
genericQuantMatrixGRP2 Man page
getConditionColumns Man page Source code
getIDLabels Man page Source code
getIntensities Man page Source code
getLongFormat Source code
getPVals Man page Source code
getRequiredColumns Man page Source code
grp2PullDownExample Man page
melt_maxquant_to_long_glf Source code
mergeLimmEBayesResult Man page Source code
mqQuantMatrixGRP2 Man page
multigroupEBaysQvalue Man page Source code
onAttach Source code
piwotPiw Man page Source code
plotNicely Man page Source code
proteinColumns Man page
remap_PD_ProteinTable Man page Source code
removeDecorrelated Source code
remove_feature_with_few Source code
reportMissing Source code
scriptCopyHelperVec Source code
transitionCorrelations Man page Source code Source code
transitionCorrelationsJack Man page Source code
protViz/SRMService documentation built on Oct. 4, 2018, 12:27 a.m.