contrasts.fit.NA: version of limma::contrast.fit which is able to handle NA's...

In protViz/SRMService: Report Quantitative Mass Spectrometry Data

Description

version of limma::contrast.fit which is able to handle NA's in one of the conditions.

Usage

contrasts.fit.NA(fit, cont)

Arguments

fit	returned by lmFit
cont	returned by limma::makeContrasts

Value

tibble with pValues and fold changes

Examples

## Not run: 
if(FALSE){
cont <- limma::makeContrasts(contrasts = contrasts, levels =  levels)
fit <- lmFit(intmat , designMatrix)
res <- contrasts.fit.NA(fit,cont)
}

## End(Not run)

protViz/SRMService documentation built on Nov. 13, 2021, 9:58 a.m.