QCProteinReport-class: Perform 2 group analysis with visualization

In protViz/SRMService: Report Quantitative Mass Spectrometry Data

Description

Perform 2 group analysis with visualization

Fields

proteinIntensity

data.frame where colnames are Raw.File names, row.names are protein ID's and cells are protein abundances.

proteinAnnotation

information about the proteins, nr of peptides etc.

nrPeptides

min number of peptides per protein

maxNA

maximum number of NA's

projectName

name of project

projectID

name of experiment

Methods

getNrNAs()

return number of NAs per protein

setMQProteinGroups(MQProteinGroups, debug = FALSE)

set MQ protein groups table

setProteins(protein)

used to verify proteingroups structure and set members

protViz/SRMService documentation built on Nov. 13, 2021, 9:58 a.m.