inst/run_scripts/annotationHub.R
In protViz/fgczgseaora: ORA, sigORA and GSEA functionalities for proteomic data
remotes::install_bioc("AnnotationHub")
library(AnnotationHub)
ah <- AnnotationHub::AnnotationHub()
orgdb <- AnnotationHub::query(ah, c("OrgDb", "maintainer@bioconductor.org"))
specODB <- orgdb[[grep("Homo",orgdb$species)]]
egid <- AnnotationDbi::keys(specODB, "ENTREZID")
select(specODB, egid, c("SYMBOL", "GENENAME", "UNIPROT"), "ENTREZID") %>% dim()
protViz/fgczgseaora documentation built on Dec. 14, 2021, 9:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
remotes::install_bioc("AnnotationHub")
library(AnnotationHub)
ah <- AnnotationHub::AnnotationHub()
orgdb <- AnnotationHub::query(ah, c("OrgDb", "maintainer@bioconductor.org"))
specODB <- orgdb[[grep("Homo",orgdb$species)]]
egid <- AnnotationDbi::keys(specODB, "ENTREZID")
select(specODB, egid, c("SYMBOL", "GENENAME", "UNIPROT"), "ENTREZID") %>% dim()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.