Man pages for psikon/cuffgo
cufflinks and GO analysis

cuffcompare	part of a cufflinks analysis
cuffdiff	part of a cuffdiff analysis
cufflinks	part of a cufflinks analysis
cuffmerge	part of a cufflinks analysis
mapAllGOtoData	seach all GO ontologies for complete dataframes
mapGOtoData	wrapper function to read cufflinks output Files
mapGOtoElement	search GO terms for one element
readCufflinksFiles	reads cufflinks output Files
readRefmap	reads output in .refmap format from cuffcompare
readTmap	reads output in .tmap format from cuffcompare
readTracking	reads output in tracking files generated by the programs like...
saveToGTF	saves dataframes to cufflinks specific GTF format