cuffcompare | part of a cufflinks analysis |
cuffdiff | part of a cuffdiff analysis |
cufflinks | part of a cufflinks analysis |
cuffmerge | part of a cufflinks analysis |
mapAllGOtoData | seach all GO ontologies for complete dataframes |
mapGOtoData | wrapper function to read cufflinks output Files |
mapGOtoElement | search GO terms for one element |
readCufflinksFiles | reads cufflinks output Files |
readRefmap | reads output in .refmap format from cuffcompare |
readTmap | reads output in .tmap format from cuffcompare |
readTracking | reads output in tracking files generated by the programs like... |
saveToGTF | saves dataframes to cufflinks specific GTF format |
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