mapGOtoData: wrapper function to read cufflinks output Files

In psikon/cuffgo: cufflinks and GO analysis

Description

This function parses the output files generated by the programs cufflinks, cuffcompare, cuffmerge and cuffdiff and generates a dataframe with all containing data

Usage

         mapGOtoData(dataframe,genome,identifier,rowname,category)
         

Arguments

dataframe	dataframe where the GO Identifier will be added
genome	which genome will be used
identifier	which type of identifiers will be used e.g. ensembl="ensgene",...
rowname	name of the row that will be added
category	which ontologie will be used e.g. BP - biological process, CC - cellular component, MF - molecular function

See Also

mapGOtoElement, mapAllGOtoData, goseq

Examples

         ## read cufflinks GTF File
         mapGOtoData(cuffdiff, "hg19","ensGene","BP","BP")
         

psikon/cuffgo documentation built on May 26, 2019, 10:32 a.m.