Files in pwatrick/DrugRepurposingToolKit
A High-Throughput Approach Integrating Gene Expression Signatures and Clinical Data to Repurpose Drugs
DESCRIPTION
DrugRepurposingToolKit.Rproj
LICENSE
NAMESPACE
R/add_subanalysis_flags.R
R/calculate_comorbidity_scores.R
R/clean_process_clinical_data.R
R/data.R
R/define_observation_periods.R
R/extract_clinical_data.R
R/extract_icd_codes.R
R/map_drugs_to_ingredients.R
R/observation_period_drug_exposures.R
R/process_biomarker.R
R/process_clinical_data_lmm.R
R/process_covariates.R
README.md
_pkgdown.yml
data/ddi_ohdsi_rxnorm.rda
data/ddi_rxcui2in.rda
data/ddi_rxcui_names.rda
data/dr_ts_tutorial_data.rda
data/drugsHyperlipidemia.rda
data/drugsHypertension.rda
data/ohdsi_icd_elix.rda
data/vw_weights.rda
docs/404.html
docs/LICENSE.html
docs/_config.yml
docs/articles/all_of_us_example.html
docs/articles/all_of_us_example_files/crosstalk-1.1.1/css/crosstalk.css
docs/articles/all_of_us_example_files/crosstalk-1.1.1/js/crosstalk.js
docs/articles/all_of_us_example_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/articles/all_of_us_example_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/articles/all_of_us_example_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/articles/all_of_us_example_files/datatables-binding-0.17/datatables.js
docs/articles/all_of_us_example_files/datatables-binding-0.19/datatables.js
docs/articles/all_of_us_example_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/all_of_us_example_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/articles/all_of_us_example_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/articles/all_of_us_example_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/articles/all_of_us_example_files/header-attrs-2.10/header-attrs.js
docs/articles/all_of_us_example_files/header-attrs-2.11/header-attrs.js
docs/articles/all_of_us_example_files/header-attrs-2.7/header-attrs.js
docs/articles/all_of_us_example_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/all_of_us_example_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/all_of_us_example_files/jquery-3.5.1/jquery-AUTHORS.txt
docs/articles/all_of_us_example_files/jquery-3.5.1/jquery.js
docs/articles/all_of_us_example_files/jquery-3.5.1/jquery.min.js
docs/articles/all_of_us_example_files/jquery-3.5.1/jquery.min.map
docs/articles/all_of_us_example_files/jquery-3.6.0/jquery-3.6.0.js
docs/articles/all_of_us_example_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/articles/all_of_us_example_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/articles/gene_expression_signature_matching_example.html
docs/articles/gene_expression_signature_matching_example_files/crosstalk-1.1.1/css/crosstalk.css
docs/articles/gene_expression_signature_matching_example_files/crosstalk-1.1.1/js/crosstalk.js
docs/articles/gene_expression_signature_matching_example_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/articles/gene_expression_signature_matching_example_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/articles/gene_expression_signature_matching_example_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/articles/gene_expression_signature_matching_example_files/datatables-binding-0.17/datatables.js
docs/articles/gene_expression_signature_matching_example_files/datatables-binding-0.19/datatables.js
docs/articles/gene_expression_signature_matching_example_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/gene_expression_signature_matching_example_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/articles/gene_expression_signature_matching_example_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/articles/gene_expression_signature_matching_example_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/articles/gene_expression_signature_matching_example_files/figure-html/unnamed-chunk-5-1.png
docs/articles/gene_expression_signature_matching_example_files/header-attrs-2.10/header-attrs.js
docs/articles/gene_expression_signature_matching_example_files/header-attrs-2.11/header-attrs.js
docs/articles/gene_expression_signature_matching_example_files/header-attrs-2.7/header-attrs.js
docs/articles/gene_expression_signature_matching_example_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/gene_expression_signature_matching_example_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/gene_expression_signature_matching_example_files/jquery-3.5.1/jquery-AUTHORS.txt
docs/articles/gene_expression_signature_matching_example_files/jquery-3.5.1/jquery.js
docs/articles/gene_expression_signature_matching_example_files/jquery-3.5.1/jquery.min.js
docs/articles/gene_expression_signature_matching_example_files/jquery-3.5.1/jquery.min.map
docs/articles/gene_expression_signature_matching_example_files/jquery-3.6.0/jquery-3.6.0.js
docs/articles/gene_expression_signature_matching_example_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/articles/gene_expression_signature_matching_example_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/articles/gene_expression_signature_matching_example_files/nouislider-7.0.10/jquery.nouislider.min.css
docs/articles/gene_expression_signature_matching_example_files/nouislider-7.0.10/jquery.nouislider.min.js
docs/articles/gene_expression_signature_matching_example_files/selectize-0.12.0/selectize.bootstrap3.css
docs/articles/gene_expression_signature_matching_example_files/selectize-0.12.0/selectize.min.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/add_subanalysis_flags.html
docs/reference/calculate_comorbidity_scores.html
docs/reference/clean_process_clinical_data.html
docs/reference/ddi_ohdsi_rxnorm.html
docs/reference/ddi_rxcui2in.html
docs/reference/ddi_rxcui_names.html
docs/reference/define_observation_periods.html
docs/reference/dr_ts_tutorial_data.html
docs/reference/drugsHyperlipidemia.html
docs/reference/drugsHypertension.html
docs/reference/extract_clinical_data.html
docs/reference/extract_icd_codes.html
docs/reference/index.html
docs/reference/map_drugs_to_ingredients.html
docs/reference/observation_period_drug_exposures.html
docs/reference/ohdsi_icd_elix.html
docs/reference/process_biomarker.html
docs/reference/process_clinical_data_lmm.html
docs/reference/process_covariates.html
docs/reference/vw_weights.html
docs/sitemap.xml
man/add_subanalysis_flags.Rd
man/calculate_comorbidity_scores.Rd
man/clean_process_clinical_data.Rd
man/ddi_ohdsi_rxnorm.Rd
man/ddi_rxcui2in.Rd
man/ddi_rxcui_names.Rd
man/define_observation_periods.Rd
man/dr_ts_tutorial_data.Rd
man/drugsHyperlipidemia.Rd
man/drugsHypertension.Rd
man/extract_clinical_data.Rd
man/extract_icd_codes.Rd
man/map_drugs_to_ingredients.Rd
man/observation_period_drug_exposures.Rd
man/ohdsi_icd_elix.Rd
man/process_biomarker.Rd
man/process_clinical_data_lmm.Rd
man/process_covariates.Rd
man/vw_weights.Rd
vignettes/all_of_us_example.Rmd
vignettes/gene_expression_signature_matching_example.Rmd
