Description Usage Arguments Value
Caculates internal parameters and equilbirum staring values for state variables
1 2 3 4 | Set_up(LEP = 1, delta = 960000, HPS = 10000, PPS = 2000, TPrev = 0.02,
CPrev = 0.07, PCPrev = 0.2, AEL = 2, ATL = 2, ADI = 3, LEH = 54,
phi = 0.8, chi = 0.5, RR_cysticercosis = 1, epsilon = 0.01,
RR_infection = 1, RR_consumption = -0.25)
|
LEP |
Pig life expectancy (years) |
delta |
Egg production rate (per month) |
HPS |
Human population size |
PPS |
Pig population size |
TPrev |
Taeniasis prevalence |
CPrev |
Cysticercosis prevalence in humans |
PCPrev |
Cysticercosis prevalence in pigs |
AEL |
Average life expectancy of egg in the environment (weeks) |
ATL |
Average life expectancy of T. solium adult worm in human (years) |
ADI |
Average duration of cycticercosis infection in humans (years) |
LEH |
Average life expectancy of a human (years) |
phi |
Proportion of infected pigs with low-intensity cyst burden |
chi |
Average number of pork meals (200g portion) per person per month |
RR_cysticercosis |
Risk multiplier for Cysticercosis if human has Taeniasis |
epsilon |
Pig rate of loss of naturally aquired immunity |
RR_infection |
Increased RR of infection given consumption of high cyct burden pork, compared with low cyst burden |
RR_consumption |
Decreased RR of consumption of high cyst burden pork, compared with low cyst burden pork |
Two lists of parameters and state variable values
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