API for quadbiolab/Pando
Inferring regulomes from multi-modal single-cell genomics data
| Global functions | |
|---|---|
| DefaultNetwork | Man page Source code |
| DefaultNetwork.GRNData | Man page Source code |
| DefaultNetwork.RegulatoryNetwork | Man page Source code |
| GRNData | Man page |
| GRNData-class | Man page |
| GetAssay | Man page Source code |
| GetAssay.GRNData | Man page Source code |
| GetAssaySummary | Man page Source code |
| GetAssaySummary.GRNData | Man page Source code |
| GetAssaySummary.Seurat | Man page Source code |
| GetGRN | Man page Source code |
| GetGRN.GRNData | Man page Source code |
| GetNetwork | Man page Source code |
| GetNetwork.GRNData | Man page Source code |
| GetNetwork.RegulatoryNetwork | Man page Source code |
| LayerData | Man page Source code |
| LayerData.GRNData | Man page Source code |
| Modules | Man page |
| Network | Man page |
| Network-class | Man page |
| NetworkFeatures | Man page Source code |
| NetworkFeatures.GRNData | Man page Source code |
| NetworkFeatures.RegulatoryNetwork | Man page Source code |
| NetworkGraph | Man page Source code |
| NetworkGraph.GRNData | Man page Source code |
| NetworkGraph.Network | Man page Source code |
| NetworkGraph.RegulatoryNetwork | Man page Source code |
| NetworkModules | Man page Source code |
| NetworkModules.GRNData | Man page Source code |
| NetworkModules.Network | Man page Source code |
| NetworkModules.RegulatoryNetwork | Man page Source code |
| NetworkParams | Man page Source code |
| NetworkParams.GRNData | Man page Source code |
| NetworkParams.Network | Man page Source code |
| NetworkParams.RegulatoryNetwork | Man page Source code |
| NetworkRegions | Man page Source code |
| NetworkRegions.GRNData | Man page Source code |
| NetworkRegions.RegulatoryNetwork | Man page Source code |
| NetworkTFs | Man page Source code |
| NetworkTFs.GRNData | Man page Source code |
| NetworkTFs.RegulatoryNetwork | Man page Source code |
| Params | Man page Source code |
| Params.GRNData | Man page Source code |
| Params.RegulatoryNetwork | Man page Source code |
| Regions | Man page |
| Regions-class | Man page |
| RegulatoryNetwork | Man page |
| RegulatoryNetwork-class | Man page |
| VariableFeatures | Man page Source code |
| VariableFeatures.GRNData | Man page Source code |
| aggregate_assay | Man page Source code |
| aggregate_matrix | Man page Source code |
| check_if_available | Source code |
| coef.GRNData | Man page Source code |
| coef.Network | Man page Source code |
| coef.RegulatoryNetwork | Man page Source code |
| create_GRNData | Man page Source code |
| dMcast | Man page Source code |
| fast_aggregate | Man page Source code |
| find_modules | Man page Source code |
| find_modules.GRNData | Man page |
| find_modules.Network | Man page Source code |
| find_motifs | Man page Source code |
| find_motifs.GRNData | Man page Source code |
| find_peaks_near_genes | Man page Source code |
| fit_bagging_ridge | Man page Source code |
| fit_bayesian_ridge | Man page Source code |
| fit_brms | Man page Source code |
| fit_cvglmnet | Man page Source code |
| fit_glm | Man page Source code |
| fit_glmnet | Man page Source code |
| fit_grn_models | Man page Source code |
| fit_grn_models.GRNData | Man page Source code |
| fit_model | Man page Source code |
| fit_xgb | Man page Source code |
| format_coefs | Man page Source code |
| get_network_graph | Man page Source code |
| get_network_graph.GRNData | Man page |
| get_tf_network | Man page Source code |
| get_tf_network.GRNData | Man page |
| get_umap | Man page Source code |
| gof | Man page Source code |
| gof.GRNData | Man page Source code |
| gof.Network | Man page Source code |
| gof.RegulatoryNetwork | Man page Source code |
| hello | Man page |
| infer_grn | Man page Source code |
| infer_grn.GRNData | Man page Source code |
| initiate_grn | Man page Source code |
| initiate_grn.GRNData | Man page Source code |
| initiate_grn.Seurat | Man page Source code |
| log_message | Man page Source code |
| map_par | Man page Source code |
| no_legend | Man page Source code |
| no_margin | Man page Source code |
| no_x_text | Man page Source code |
| no_y_text | Man page Source code |
| plot_gof | Man page Source code |
| plot_gof.GRNData | Man page |
| plot_module_metrics | Man page Source code |
| plot_module_metrics.GRNData | Man page |
| plot_network_graph | Man page Source code |
| plot_network_graph.GRNData | Man page |
| plot_tf_network | Man page Source code |
| plot_tf_network.GRNData | Man page |
| print.Modules | Man page Source code |
| print.Network | Man page Source code |
| print.Regions | Man page Source code |
| print.RegulatoryNetwork | Man page Source code |
| r2 | Man page Source code |
| rse | Man page Source code |
| sparse_cor | Man page Source code |
| sparse_covcor | Man page Source code |
| sse | Man page Source code |
