convert.matrix: Convert existing data matrix into a MCSim object of type...
In quangnguyen1995/MCTools: Supplemental Functions to work with microbiome data in R
Description
The function takes a data matrix and a corresponding phylogenetic tree, converting in to type MCSim
and type sim_phylo so that internal methods and the outcome.sim function can be used on real taxonomic data.
Usage
1
convert.matrix(data, tree)
Arguments
data
The data in matrix format with samples as rows and OTUs as columns
tree
A phylogenetic tree of newick format loaded in using the ape package
quangnguyen1995/MCTools documentation built on May 23, 2019, 8:56 a.m.
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Description
The function takes a data matrix and a corresponding phylogenetic tree, converting in to type MCSim
and type sim_phylo so that internal methods and the outcome.sim function can be used on real taxonomic data.
Usage
1 | convert.matrix(data, tree)
|
Arguments
data |
The data in matrix format with samples as rows and OTUs as columns |
tree |
A phylogenetic tree of newick format loaded in using the |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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