tree.check: Checking for phylogenetic tree and constructing tree
In quangnguyen1995/MCTools: Supplemental Functions to work with microbiome data in R
Description
Usage
Arguments
Examples
View source: R/dataload_main.R
Description
Check whether the tree file exists in a directory. If not, construct tree from
16S sequences stored in the joint analysis file (Available for taxa-all options only). The FastTree
program will be run externally to generate trees accordingly.
Usage
1
tree.check(file, progfile)
Arguments
file
Directory containing the data_directory.csv file.
progfile
Directory containing the FastTree executable.
Examples
1
2
# do not run
# tree.check(file = "./data_directory.csv", progfile = "../software/FastTree")
quangnguyen1995/MCTools documentation built on May 23, 2019, 8:56 a.m.
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Description Usage Arguments Examples
View source: R/dataload_main.R
Description
Check whether the tree file exists in a directory. If not, construct tree from 16S sequences stored in the joint analysis file (Available for taxa-all options only). The FastTree program will be run externally to generate trees accordingly.
Usage
1 | tree.check(file, progfile)
|
Arguments
file |
Directory containing the |
progfile |
Directory containing the |
Examples
1 2 | # do not run
# tree.check(file = "./data_directory.csv", progfile = "../software/FastTree")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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