missing.imputation: Matching between unq_ids and mblid for metabolomics to match...

In quangnguyen1995/MCTools: Supplemental Functions to work with microbiome data in R

Description

Matching unq_ids and mblids for data. First it searches for missing mblids in the data set and capture their unq_ids. Then it subsets the reference according to the unq_ids found. Then it selects the time period based upon the timelabel. For every row of data we check if their unq_ids is in the subsetted reference's unq_id, then we grab the indices of those ones. If there are more than one unq_id, we select the one with the highest read count. If not, we grab the mblid and inputted it in.

Usage

missing.imputation(reference, data, timelabel)

Arguments

reference	The data frame containing references
data	The data frame of the metabolomic data frame of interest
timelabel	The label of time point of interest

quangnguyen1995/MCTools documentation built on May 23, 2019, 8:56 a.m.