Man pages for qwang-big/irene
R interface to interactive epigenetic analysis
| annotNets | Annotate Networks |
| combineGrpRgn | Intersect Combined Regions |
| combineRgn | Combine Genomic Regions |
| dPCA | Differential Principal Component Analysis |
| edgeRank | Assign weights to edges |
| exportApps | Export Apps |
| exportD | Export Dobs |
| exportJSONnets | Export Network |
| exportJSONpathways | Export Pathways |
| exportMultinets | Export Network Communities |
| filterPeak | Filter Peak Sets |
| filterRgn | Filter Genomic Regions |
| getAUC | Get AUC of ROC for Gene Ranks |
| getId | Get Desired IDs |
| getPromId | Get Promoter IDs |
| importBW | Import density data from BigWigs |
| isEnh | Test an input ID |
| pageRank | Rank meta-genes with the PageRank algorithm |
| plotD | Plot D Matrix |
| plotRank | Plot ROC for Gene Ranks |
| readBED | Read a BED File |
| readBW | Read data from one BigWig file |
| writeData | Write Epigenetic Data |
| writeMarkers | Write Marker Genes to File |
| writeRank | Write Gene Ranks to File |
