exportJSONpathways: Export Pathways

In qwang-big/irene: R interface to interactive epigenetic analysis

Description

Export enriched pathways to a JSON file

Usage

exportJSONpathways(enriched, prefix, n)

Arguments

enriched	Lists of data.frames exported by annotNets
file	The prefix of the JSON filename to be exported.
n	Number of pathways to be exported from each database, the pathways are sorted from smallest to the largest by adjusted p-values.

Details

This functions writes a JSON file containing the pathways, p-values, and gene names in each pathway which can be further display with the web application net.

Author(s)

Qi Wang

Examples

data(sample)
exportJSONpathways(res$ga, 'CLL', n=15)

qwang-big/irene documentation built on May 23, 2019, 1:47 p.m.