getPromId: Get Promoter IDs
In qwang-big/irene: R interface to interactive epigenetic analysis

Description Usage Arguments Value Author(s) Examples

Get promoter IDs sorted by PC from a data.frame of genomic regions

1	getPromId(gr ,pc)

`gr`	data.frame of genomic regions output by `dPCA`, which contains the id and PC
`pc`	the name of the PC used to sort the promoter IDs, must be contained in the column names of the data.frame

Vector of sorted promoter IDs

Qi Wang

data(markers)
data(CLL)
j <- c(1,2,6,8)
res <- dPCA(meta, bed, data, datasets=j, transform=j, normlen=j, processedData=TRUE, verbose=TRUE)
prom <- getPromId(res$gr)