SS_write_biol: Writes life history parameters

In r4atlantis/atlantisom: Generates Data Sets From Atlantis Scenarios

Writes life history parameters

Description

Function to pull relevant life history parameters from atlantis to write to a Stock Synthesis control and/or data file.

Usage

SS_write_biol(
  ctl_obj,
  biolprm_object,
  species_code,
  M_est = NULL,
  wtsage,
  lensage,
  lenwt_a = NULL,
  lenwt_b = NULL
)

Arguments

ctl_obj	list that is returned from r4ss::read_ctl() that contains the control file
biolprm_object	list with a number of atlantis biological parameters
species_code	the three-letter species code of the fish you are creating a model for
M_est	scalar value for M of the species
wtsage	two dimensional vector with column names agecl and meanwt giving mean body weight at age in grams
lenage	three dimensional vector with column names agecl, meanln, and cvln giving mean body length and cv of body length at age

Value

an updated ctl_obj that has replaced parameters with the atlantis-created ones

r4atlantis/atlantisom documentation built on Nov. 12, 2023, 2:59 a.m.