#' @param file_fgs A character value specifying the file name of the Atlantis
#' functional groups file. The file should be located in your current working
#' directory or the folder you specify in \code{dir}.
#' The argument can also be specified as the full path name, just as long as
#' argument \code{dir} is specified as \code{NULL}.
#' Usually, the filename is \code{"functionalGroups.csv"}.
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