SS_splitdat: Split apart bootstrap data to make input file.

In r4ss/r4ss: R Code for Stock Synthesis

Split apart bootstrap data to make input file.

Description

SS_splitdat() is being deprecated because it is no longer needed in as of Stock Synthesis 3.30.19, where the files are already split. If needing to split older version of SS3, this could be done by reading in the file to SS_readdat(), specifying the section argument to grab the desired part of the file, and then writing out the file using. ‘SS_writedat()’.

Usage

SS_splitdat(
  inpath = "working_directory",
  outpath = "working_directory",
  inname = "data.ss_new",
  outpattern = "BootData",
  number = FALSE,
  verbose = TRUE,
  fillblank = TRUE,
  MLE = TRUE,
  inputs = FALSE,
  notes = ""
)

Arguments

inpath	Directory containing the input file. By default the working directory given by getwd() is used. Default="working_directory".
outpath	Directory into which the output file will be written. Default="working_directory".
inname	File name of input data file to be split. Default="Data.SS_New".
outpattern	File name of output data file. Default="BootData".
number	Append bootstrap number to the file name chosen in outpattern? Default=F.
verbose	A logical value specifying if output should be printed to the screen.
fillblank	Replace blank lines with "#". Helps with running on linux. Default=TRUE.
MLE	Grab the maximum likelihood values from the second block in Data.SS_New (instead of bootstrap values or copies of inputs)? Default=TRUE.
inputs	Grab the copy of the input values values from the first block in Data.SS_New (instead of MLE or bootstrap values)? Default=F.
notes	Notes to the top of the new file (comment indicator "#C" will be added). Default="".

Author(s)

Ian Taylor

r4ss/r4ss documentation built on April 30, 2024, 4:42 a.m.