View source: R/SSplotAgeMatrix.R
SSplotAgeMatrix | R Documentation |
Distribution of length at age or observed age at true age is represented as a histogram. Values are from the AGE_LENGTH_KEY and AGE_AGE_KEY sections of Report.sso ($ALK and $AAK in the list created by SS_output)
SSplotAgeMatrix(
replist,
option = 1,
slices = NULL,
scale = NULL,
add = FALSE,
col.grid = "grey90",
col.bars = grey(0, alpha = 0.5),
shift_hi = 0,
shift_lo = 0,
plot = TRUE,
print = FALSE,
labels = c("Age", "Length", "True age", "Observed age", "for ageing error type",
"Distribution of", "at"),
pwidth = 6.5,
pheight = 5,
punits = "in",
res = 300,
ptsize = 10,
cex.main = 1,
mainTitle = TRUE,
plotdir = "default"
)
replist |
A list object created by |
option |
Switch set to either 1 for length at true age or 2 for obs. age at true age |
slices |
Optional input to choose which matrix (slice of the 3D-array) within $AAK or $ALK to plot. By default all slices will be shown. For ageing imprecision this should correspond to the ageing error matrix number. Distribution of length at age ($ALK) is ordered by season, sub-season, and then morph. A future version could allow subsetting plots by these dimensions. |
scale |
Multiplier for bars showing distribution. Species with many ages benefit from expanded bars. NULL value causes function to attempt automatic scaling. |
add |
Add to existing plot |
col.grid |
A character value specifying the color of the grid lines |
col.bars |
The color of the filled polygons. |
shift_hi |
A numeric value specifying the amount to shift the top of the polygon up. |
shift_lo |
A numeric value specifying the amount to shift the bottom of the polygon up. |
plot |
Plot to active plot device? |
print |
Print to PNG files? |
labels |
Vector of labels for plots (titles and axis labels). |
pwidth |
Default width of plots printed to files in units of
|
pheight |
Height of plots printed to png files in units of |
punits |
Units for |
res |
Resolution of plots printed to files.
The default is |
ptsize |
Point size for plotted text in plots printed to files (see
|
cex.main |
Character expansion for plot titles.
The default is |
mainTitle |
Logical indicating if a title should be included at the top (not yet implemented for all plots). |
plotdir |
Directory where PNG files will be written. |
Ian G. Taylor
SSplotNumbers()
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