View source: R/SSplotCohortCatch.R
SSplotCohortCatch | R Documentation |
Cumulative catch contributions for each cohort are plotted based on estimated catch-at-age matrix and weight-at-age values by fleet. Curves are shown in units of both numbers and biomass.
SSplotCohortCatch(
replist,
subplots = 1:2,
add = FALSE,
plot = TRUE,
print = FALSE,
cohortcols = "default",
cohortfrac = 1,
cohortvec = NULL,
cohortlabfrac = 0.1,
cohortlabvec = NULL,
lwd = 3,
plotdir = "default",
xlab = "Year",
labels = c("Age", "Cumulative catch by cohort (in numbers x1000)",
"Cumulative catch by cohort (x1000 mt)"),
pwidth = 6.5,
pheight = 5,
punits = "in",
res = 300,
ptsize = 10,
cex.main = 1,
verbose = TRUE
)
replist |
A list object created by |
subplots |
Vector controlling which subplots to create |
add |
Add to existing plot? (not yet implemented) |
plot |
Plot to active plot device? |
print |
Print to PNG files? |
cohortcols |
Vector of colors to show for each cohort. Default is range of colors shade indicating time period. |
cohortfrac |
What fraction of the cohorts to include in plot. If value
< 1 is used, then cohorts are filtered to only include those with the
highest maximum cumulative catch. Value will be overridden by
|
cohortvec |
Optional vector of birth years for cohorts to include in
plot. Value overrides |
cohortlabfrac |
What fraction of the cohorts to label in plot. By
default, top 10% of cohorts are labeled. Value will be overridden by
|
cohortlabvec |
Optional vector of birth years for cohorts to label in
plot. Value overrides |
lwd |
Line width for plot elements. |
plotdir |
Directory where PNG files will be written. |
xlab |
x-label for all plots |
labels |
Vector of labels for plots (titles and axis labels). |
pwidth |
Default width of plots printed to files in units of
|
pheight |
Height of plots printed to png files in units of |
punits |
Units for |
res |
Resolution of plots printed to files.
The default is |
ptsize |
Point size for plotted text in plots printed to files (see
|
cex.main |
Character expansion for plot titles.
The default is |
verbose |
A logical value specifying if output should be printed to the screen. |
Ian Taylor
SS_plots()
, SS_output()
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