View source: R/SSplotDiscard.R
SSplotDiscard | R Documentation |
Plot fit to discard fraction from Stock Synthesis output file.
SSplotDiscard(
replist,
subplots = 1:2,
plot = TRUE,
print = FALSE,
plotdir = "default",
fleets = "all",
fleetnames = "default",
datplot = FALSE,
labels = c("Year", "Discard fraction", "Total discards", "for"),
yhi = 1,
ymax = NULL,
col1 = "blue",
col2 = "black",
pwidth = 6.5,
pheight = 5,
punits = "in",
res = 300,
ptsize = 10,
cex.main = 1,
verbose = TRUE
)
replist |
A list object created by |
subplots |
Vector of which plots to make (1 = data only, 2 = with fit).
If |
plot |
Plot to active plot device? |
print |
Print to PNG files? |
plotdir |
Directory where PNG files will be written. |
fleets |
Either the string "all", or a vector of numerical values, like c(1,3), listing fleets or surveys to be included in the plot. |
fleetnames |
Optional replacement for fleetnames used in data file. |
datplot |
Make data-only plot of discards? This can override the choice
of |
labels |
Vector of labels for plots (titles and axis labels). |
yhi |
Maximum y-value which will always be included in the plot (all data included regardless). Default = 1 so that discard fractions are always plotted on a 0-1 range, but total discard amounts which are greater than this value will exceed it. |
ymax |
Optional maximum y-value to include (useful if upper tails on discard amounts are very high) |
col1 |
First color to use in plot (for expected values) |
col2 |
Second color to use in plot (for observations and intervals) |
pwidth |
Default width of plots printed to files in units of
|
pheight |
Height of plots printed to png files in units of |
punits |
Units for |
res |
Resolution of plots printed to files.
The default is |
ptsize |
Point size for plotted text in plots printed to files (see
|
cex.main |
Character expansion for plot titles.
The default is |
verbose |
A logical value specifying if output should be printed to the screen. |
Ian G. Taylor, Ian J. Stewart, Robbie L. Emmet
SS_plots()
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.