SSplotSPR | R Documentation |
Plot time series of SPR, 1-SPR, the chosen SPR ratio and the phase plot.
SSplotSPR(
replist,
add = FALSE,
plot = TRUE,
print = FALSE,
uncertainty = TRUE,
subplots = 1:4,
forecastplot = FALSE,
col1 = "black",
col2 = "blue",
col3 = "green3",
col4 = "red",
sprtarg = "default",
btarg = "default",
minbthresh = "default",
labels = c("Year", "SPR", "1-SPR", "Relative fishing intensity",
"Relative spawning output"),
pwidth = 6.5,
pheight = 5,
pheight_tall = 5,
punits = "in",
res = 300,
ptsize = 10,
cex.main = 1,
plotdir = "default",
verbose = TRUE
)
replist |
A list object created by |
add |
add to existing plot (not yet implemented) |
plot |
Plot to active plot device? |
print |
Print to PNG files? |
uncertainty |
include plots showing uncertainty? |
subplots |
vector controlling which subplots to create Numbering of subplots is as follows:
|
forecastplot |
Include forecast years in plot? |
col1 |
first color used |
col2 |
second color used |
col3 |
third color used |
col4 |
fourth color used |
sprtarg |
F/SPR proxy target. "default" chooses based on model output, where models which have SPR_report_basis = 0 or 1 specified in the starter file will use the SPR target specified in the forecast file. Models which have SPR_report_basis = 2 will use SPR at MSY for the SPR target and models which have the SPR_report_basis = 3 will use SPR at Btarget for the SPR target in these plots. Zero or negative values of sprtarg input here will cause no horizontal line to be plotted. |
btarg |
target depletion to be used in plots showing depletion. May be omitted by setting to NA. "default" chooses based on model output. |
minbthresh |
minimum biomass threshold to be used in plots showing depletion. May be omitted by setting to NA. "default" chooses based on model output. |
labels |
Vector of labels for plots (titles and axis labels). |
pwidth |
Default width of plots printed to files in units of
|
pheight |
Height of plots printed to png files in units of |
pheight_tall |
Height of tall plots printed to png files in units of
|
punits |
Units for |
res |
Resolution of plots printed to files.
The default is |
ptsize |
Point size for plotted text in plots printed to files (see
|
cex.main |
Character expansion for plot titles.
The default is |
plotdir |
Directory where PNG files will be written. |
verbose |
A logical value specifying if output should be printed to the screen. |
Ian Stewart, Ian Taylor
SS_plots()
, SS_output()
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