LoadVCF: Load data from VCF output files
In rahuldhodapkar/melange: Multi-Modal Data Import Utilities for Seurat
Description
Usage
Arguments
Value
Description
Combine variants by position only, to use as input for describing positions of
mutational frequency.
Usage
1
2
LoadVCF(cells, vcf.filenames, germline.filename,
consolidation.factor = 10000)
Arguments
cells
character vector containing cell IDs
vcf.filenames
character vector containing VCF file paths
germline.filename
single filename for germline vcf
consolidation.factor
the factor to use for dividing
Value
a melange object with consolidated variants by consolidation.factor
rows will be named with the form: _<chr_name>:<position>
rahuldhodapkar/melange documentation built on Nov. 5, 2019, 2:07 a.m.
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Description Usage Arguments Value
Description
Combine variants by position only, to use as input for describing positions of mutational frequency.
Usage
1 2 | LoadVCF(cells, vcf.filenames, germline.filename,
consolidation.factor = 10000)
|
Arguments
cells |
character vector containing cell IDs |
vcf.filenames |
character vector containing VCF file paths |
germline.filename |
single filename for germline vcf |
consolidation.factor |
the factor to use for dividing |
Value
a melange object with consolidated variants by consolidation.factor rows will be named with the form: _<chr_name>:<position>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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