LoadRSEM: Load Data from RSEM transcript quantitation.

In rahuldhodapkar/melange: Multi-Modal Data Import Utilities for Seurat

Description

LoadRSEM loads rsem data for the provided cell to file mapping

Usage

LoadRSEM(cells, rsem.filenames, quantitation.method = "TPM",
  min.quant.value = 0)

Arguments

cells	character vector containing cell IDs
rsem.filenames	character vector containing RSEM file paths.
quantitation.method	String, default 'TPM', returns expected counts from RSEM files. 'count' also supported.
min.quant.value	numeric, containing the minimum quantitation a gene must have to be included in the output @data matrix

Value

A matrix containing the TPM counts of each ENSG merged from all cells supplied in a Seurat-importable format.

Examples

## Not run: 
LoadRSEM(c('1', '2', '3'), c('1.rsem', '2.rsem', '3.rsem'))

## End(Not run)

rahuldhodapkar/melange documentation built on Nov. 5, 2019, 2:07 a.m.