Man pages for ramadatta/CPgeneProfiler
Profiles the Carbapenamase genes from the genome assemblies (One Line, Title Case)
| assemblystat | Generate assembly statistics from input genomes assemblies... |
| cocarriage | Find cocarriage of CP genes in the input genomes |
| cpblast | Generate NCBI BLAST Results by aligning input genome... |
| CPcontlen | Contig length function |
| cpcore | CPgeneProfiler Core function |
| CPgeneProfiler | Generate a profile of carbapenamase genes from the genome... |
| cpprofile | Carbapenamase Gene Profile |
| cp_summarize | CPgeneProfiler Results Summary |
| db_summary | CPgeneProfiler Database Summary |
| files2move | Move the output files for summarizing CPgeneProfiler Results |
| filt_blast | Filter BLAST results |
| jpeg2pdf | Converts jpeg images to pdf for summary report |
| jpeg_merge | Merge jpeg images to pdf for summary report |
| pdfs2pdf | Converts multiple pdf files with plots to single pdf for... |
| plot_conlen | Plot CP gene contig length distribution |
| png2pdf | Converts png images to pdf for summary report |
| png_merge | Merge png images to pdf for summary report |
| tiff2pdf | Converts tiff images to pdf for summary report |
| tiff_merge | Merge tiff images to pdf for summary report |
| upsetR_plot | UpsetR - Set intersection plot visualization |
