cocarriage: Find cocarriage of CP genes in the input genomes
In ramadatta/CPgeneProfiler: Profiles the Carbapenamase genes from the genome assemblies (One Line, Title Case)
cocarriage R Documentation
Find cocarriage of CP genes in the input genomes
Description
cocarriage() finds if 2 or more CP genes exists in same contig
or multiple contigs. This function should be used after running
filt_blast().
Usage
cocarriage(cpgcov = 100, cpgpident = 100)
Arguments
cpgcov
CP gene coverage cutoff (default=100)
cpgpident
CP gene percentage identity with genomic sequence (default=100)
Examples
cocarriage()
cocarriage(cpgcov=100, cpgpident=100)
ramadatta/CPgeneProfiler documentation built on Jan. 9, 2025, 4:22 a.m.
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| cocarriage | R Documentation |
Find cocarriage of CP genes in the input genomes
Description
cocarriage() finds if 2 or more CP genes exists in same contig
or multiple contigs. This function should be used after running
filt_blast().
Usage
cocarriage(cpgcov = 100, cpgpident = 100)
Arguments
cpgcov |
CP gene coverage cutoff (default=100) |
cpgpident |
CP gene percentage identity with genomic sequence (default=100) |
Examples
cocarriage()
cocarriage(cpgcov=100, cpgpident=100)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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