filt_blast: Filter BLAST results
In ramadatta/CPgeneProfiler: Profiles the Carbapenamase genes from the genome assemblies (One Line, Title Case)
filt_blast R Documentation
Filter BLAST results
Description
filt_blast filters the output results obtained from cpblast().
The filter is based on CP gene coverage and Percentage Identity
Usage
filt_blast(cpgcov = 100, cpgpident = 100)
Arguments
cpgcov
CP gene coverage cutoff (default=100)
cpgpident
CP gene percentage identity with genomic sequence (default=100)
Examples
filt_blast()
filt_blast(cpgcov=100, cpgpident=100)
ramadatta/CPgeneProfiler documentation built on Jan. 9, 2025, 4:22 a.m.
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| filt_blast | R Documentation |
Filter BLAST results
Description
filt_blast filters the output results obtained from cpblast().
The filter is based on CP gene coverage and Percentage Identity
Usage
filt_blast(cpgcov = 100, cpgpident = 100)
Arguments
cpgcov |
CP gene coverage cutoff (default=100) |
cpgpident |
CP gene percentage identity with genomic sequence (default=100) |
Examples
filt_blast()
filt_blast(cpgcov=100, cpgpident=100)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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