cp_summarize: CPgeneProfiler Results Summary

In ramadatta/CPgeneProfiler: Profiles the Carbapenamase genes from the genome assemblies (One Line, Title Case)

CPgeneProfiler Results Summary

Description

Summarize all the results from CPgeneProfiler output

Usage

cp_summarize(
  outdir_loc = "CPgeneProfiler_Output",
  outdir = "CPgeneProfiler_Output",
  report = "SummaryPlots",
  image = "png"
)

Arguments

outdir_loc	output directory location (By default, output directory will be created in the input folder)
outdir	output directory (default: CPgeneProfiler_Output)
report	PDF Summary of all the plots (default: Summary)
image	format of all the output image plots. (default:png) Note: All the image plots should be in same format (png/tiff/jpeg) to form a summary report plot file in PDF

Examples

cp_summarize()
cp_summarize(outdir = "/home/user/Desktop", report="Summary" , image = "png")

ramadatta/CPgeneProfiler documentation built on Jan. 9, 2025, 4:22 a.m.