CPgeneProfiler: Generate a profile of carbapenamase genes from the genome...
In ramadatta/CPgeneProfiler: Profiles the Carbapenamase genes from the genome assemblies (One Line, Title Case)
CPgeneProfiler R Documentation
Generate a profile of carbapenamase genes from the genome assemblies
Description
CPgeneProfiler checks for a list of CarbaPenamase (CP) genes from a list of
input genome assemblies provided in fasta file format. It reports the profile of all
the CP genes available in the genome assemblies in the format of simple heatmap.
Apart from this, it also reports the presence of cocarriage of CP genes across the
input genome assemblies. Other assembly statistics such as N50, N90, Assembly Size from the
assembly are calculated and plots of length distribution of CP gene contigs from
the list of assemblies are reported. The following functions are used to run
CPgeneProfiler: cpblast(),filt_blast,cocarriage(),cpprofile(),upsetR_plot(),
plot_conlen(),assemblystat(), db_summary(), cp_summarize()
ramadatta/CPgeneProfiler documentation built on Jan. 9, 2025, 4:22 a.m.
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| CPgeneProfiler | R Documentation |
Generate a profile of carbapenamase genes from the genome assemblies
Description
CPgeneProfiler checks for a list of CarbaPenamase (CP) genes from a list of
input genome assemblies provided in fasta file format. It reports the profile of all
the CP genes available in the genome assemblies in the format of simple heatmap.
Apart from this, it also reports the presence of cocarriage of CP genes across the
input genome assemblies. Other assembly statistics such as N50, N90, Assembly Size from the
assembly are calculated and plots of length distribution of CP gene contigs from
the list of assemblies are reported. The following functions are used to run
CPgeneProfiler: cpblast(),filt_blast,cocarriage(),cpprofile(),upsetR_plot(),
plot_conlen(),assemblystat(), db_summary(), cp_summarize()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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