sybilXF-package: Integration of Seahorse extracellular flux (XF) measurements...
In ramirez-a/seahorseFBA: Integration of Seahorse extracellular flux (XF) measurements into a metabolic model to generate flux predictions
Description
Details
Author(s)
Examples
Description
This package integrates the OCR and PPR measurements produced by Seahorse's oxidative stress test and performs metabolic modeling to generate flux predictions.
Details
The DESCRIPTION file:
This package was not yet installed at build time.
Index: This package was not yet installed at build time.
Author(s)
Alfred Ramirez, Jonathan Dreyfuss
Maintainer: Alfred Ramirez <akram@bu.edu>
Examples
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#Not run
#data(seahorse_data)
#data(Recon_21A_reduced)
#data_summary <- summarize_seahorse(seahorse_data)
#ba_samples <- sample_seahorse(data_summary, nsamples=2, sample="BA")
#ba_samples <- convert_units(ba_samples, mwr=0.026)
#ba_constraints <- map_seahorse(ba_samples)
#ba_predicted_fluxes <- fluxPredict(model = Recon_21A_reduced, seahorse_data= ba_constraints)
ramirez-a/seahorseFBA documentation built on May 26, 2019, 10:14 p.m.
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Description Details Author(s) Examples
Description
This package integrates the OCR and PPR measurements produced by Seahorse's oxidative stress test and performs metabolic modeling to generate flux predictions.
Details
The DESCRIPTION file:
This package was not yet installed at build time.
Index: This package was not yet installed at build time.
Author(s)
Alfred Ramirez, Jonathan Dreyfuss
Maintainer: Alfred Ramirez <akram@bu.edu>
Examples
1 2 3 4 5 6 7 8 | #Not run
#data(seahorse_data)
#data(Recon_21A_reduced)
#data_summary <- summarize_seahorse(seahorse_data)
#ba_samples <- sample_seahorse(data_summary, nsamples=2, sample="BA")
#ba_samples <- convert_units(ba_samples, mwr=0.026)
#ba_constraints <- map_seahorse(ba_samples)
#ba_predicted_fluxes <- fluxPredict(model = Recon_21A_reduced, seahorse_data= ba_constraints)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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