Files in ramiromagno/oscillation
A Statistical Pipeline for Identifying Oscillatory Genes in Unsynchronized Single Cell RNA-Seq
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/CalcMV.R
R/FlagCluster.R
R/FormatSineOut.R
R/ImpShift.R
R/NISFun.R
R/NormForSine.R
R/Opt2Shift.R
R/OscopeENI.R
R/OscopeKM.R
R/OscopeSine.R
R/PermuCut.R
R/PipeR.R
R/PipeShiftCDF.R
R/SineFun.R
R/SineOptim.R
R/gene_statistics.R
R/io.R
R/paired_sine_model.R
R/scanK.R
R/score_matrix.R
R/utils-pipe.R
README.Rmd
README.md
data/OscopeExampleData.rda
demo/00Index
demo/Oscope.R
man/CalcMV.Rd
man/FlagCluster.Rd
man/FormatSineOut.Rd
man/ImpShift.Rd
man/NISFun.Rd
man/NormForSine.Rd
man/Opt2Shift.Rd
man/Oscope-package.Rd
man/OscopeENI.Rd
man/OscopeExampleData.Rd
man/OscopeKM.Rd
man/OscopeSine.Rd
man/PermuCut.Rd
man/PipeR.Rd
man/PipeShiftCDF.Rd
man/SineFun.Rd
man/SineOptim.Rd
man/filter_by_mean_count.Rd
man/find_optimal_phase_shift.Rd
man/gene_statistics.Rd
man/gm_mean.Rd
man/mean_variance_fit.Rd
man/median2.Rd
man/median_norm_size_factors.Rd
man/median_norm_size_factors2.Rd
man/paired_sine_analysis.Rd
man/pipe.Rd
man/pseudo_ref_sample.Rd
man/read_gsm_as_matrix.Rd
man/scanK.Rd
man/score_matrix.Rd
man/squared_epsilon.Rd
oscillation.Rproj
vignettes/Oscope_vignette.Rnw
vignettes/Oscope_vignette.tex
vignettes/Pipe.pdf
vignettes/lengetal.bib
vignettes/natbib.bst
vignettes/natbib.sty
