gene_statistics: Gene expression statistics
In ramiromagno/oscillation: A Statistical Pipeline for Identifying Oscillatory Genes in Unsynchronized Single Cell RNA-Seq
View source: R/gene_statistics.R
Description
This function computes five statistics: mean, median, variance, q
(actually, q1 and q2), and φ. The statistics q
and φ are parameter estimations related to the
Negative
Binomial distribution, a commonly assumed model for the distribution of gene
(or isoform) expression counts.
Usage
1
gene_statistics(m, p_min = 0)
Arguments
m
Matrix of gene expression values. Rows are genes and columns are
samples.
p_min
Minimum value for parameter p of the Negative Binomial
distribution to be assumed when estimating q.
ramiromagno/oscillation documentation built on April 20, 2020, 10:37 a.m.
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View source: R/gene_statistics.R
Description
This function computes five statistics: mean, median, variance, q
(actually, q1 and q2), and φ. The statistics q
and φ are parameter estimations related to the
Negative
Binomial distribution, a commonly assumed model for the distribution of gene
(or isoform) expression counts.
Usage
1 | gene_statistics(m, p_min = 0)
|
Arguments
m |
Matrix of gene expression values. Rows are genes and columns are samples. |
p_min |
Minimum value for parameter p of the Negative Binomial distribution to be assumed when estimating q. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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