filter_by_mean_count: Filter genes by mean counts

In ramiromagno/oscillation: A Statistical Pipeline for Identifying Oscillatory Genes in Unsynchronized Single Cell RNA-Seq

Description

This functions takes a dataframe of gene expression statistics (see function gene_statistics) and keeps only those genes whose mean is within low and high, i.e., lie in the interval [low, high].

Usage

filter_by_mean_count(gene_stat, low = 100, high = Inf)

Arguments

gene_stat	A dataframe as returned by function gene_statistics).
low	Lower bound for the mean (use -Inf for an effective no bound).
high	Upper bound for the mean (use Inf for an effective no bound).

Value

A dataframe of the same structure as gene_stat of filtered genes.

ramiromagno/oscillation documentation built on April 20, 2020, 10:37 a.m.