read_gsm_as_matrix: Reads a GEO GSM (.csv or .csv.gz) file
In ramiromagno/oscillation: A Statistical Pipeline for Identifying Oscillatory Genes in Unsynchronized Single Cell RNA-Seq
Description
Usage
Arguments
Value
Description
This function reads a GEO GSM file with a matrix of expression data. Rows are
genes (or isoforms) and columns are samples. It expects a first row of column
names. The first column is then used to define the rownames of the matrix.
Usage
1
read_gsm_as_matrix(filename)
Arguments
filename
The path to the GSM file. It can read compressed (.gz) files.
Value
A matrix of gene expression values. Rows are genes/isoforms and
columns are samples. Rownames are gene names.
ramiromagno/oscillation documentation built on April 20, 2020, 10:37 a.m.
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Description Usage Arguments Value
Description
This function reads a GEO GSM file with a matrix of expression data. Rows are genes (or isoforms) and columns are samples. It expects a first row of column names. The first column is then used to define the rownames of the matrix.
Usage
1 | read_gsm_as_matrix(filename)
|
Arguments
filename |
The path to the GSM file. It can read compressed (.gz) files. |
Value
A matrix of gene expression values. Rows are genes/isoforms and columns are samples. Rownames are gene names.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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