pseudo_ref_sample: Calculate the pseudo-reference sample
In ramiromagno/oscillation: A Statistical Pipeline for Identifying Oscillatory Genes in Unsynchronized Single Cell RNA-Seq
Description
Usage
Arguments
Value
View source: R/gene_statistics.R
Description
This function calculates the geometric mean across samples. This can be
regarded as a pseudo-reference sample. See
Anders & Huber (2010), page
3, denominator in equation 5.
Usage
1
Arguments
m
Matrix of gene expression values. Rows are genes and columns are
samples.
Value
A vector of geometric means, one for each gene (can be regarded as
pseudo-reference sample for each gene).
ramiromagno/oscillation documentation built on April 20, 2020, 10:37 a.m.
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Description Usage Arguments Value
View source: R/gene_statistics.R
Description
This function calculates the geometric mean across samples. This can be regarded as a pseudo-reference sample. See Anders & Huber (2010), page 3, denominator in equation 5.
Usage
1 |
Arguments
m |
Matrix of gene expression values. Rows are genes and columns are samples. |
Value
A vector of geometric means, one for each gene (can be regarded as pseudo-reference sample for each gene).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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