Description Usage Arguments Value
Writes the processed data into two files: data_samples.csv
,
data_all.csv
and returns a list containing:
all: all rows including duplicate and calibrators.
samples: samples only, no calibrators, no duplicates.
plateNUMBER:
plot: plot of the calibrators
model: model used to fit a line to the calibrators
1 2 3 4 5 6 | plates_read(plates, cal_names, cal_values, exclude_cals = list(),
additional_vars = c("var_name"), additional_sep = "_", sep = ",",
dec = "AUTO", path = ".", file_name = "plate_#NUM#.csv",
model_func = bioset::fit_lnln, plot_func = bioset::plot_lnln,
interpolate_func = bioset::interpolate_lnln, write_data = TRUE,
use_written_data = FALSE)
|
plates |
The number of plates (e.g. |
cal_names |
A vector of strings containing the names of the samples used as calibrators. |
cal_values |
A numeric vector with the known concentrations of those samples (must be in the same order). |
exclude_cals |
A list of calibrators to exclude, e.g.:
|
additional_vars |
Vector of strings containing the names for the additional columns. |
additional_sep |
String / RegExp that separates additional vars, e.g.:
|
sep |
Separator used in the csv-file, either "," or ";" (see
|
dec |
The character used for decimal points (see |
path |
The path to the file (no trailing "/" or "\" !). |
file_name |
Naming scheme for the files. The default is
|
model_func |
A function generating a model to fit the calibrators,
e.g. |
plot_func |
Function used to display the fitted line. |
interpolate_func |
A function used to interpolate the concentrations of
the other samples, based on the model, e.g.
|
write_data |
Write the calculated data into |
use_written_data |
Try to read |
A list of params.
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