icurve: icurve

In raredd/iplotr: Interactive plotting functions

Description

Interactive curves over time with optional interactive scatter plots.

Each timepoint is a column of mat, that is, times are treated as discrete and assumed to be uniformly-spaced. Observations will be linked across all plots (curves and optional scatter plots) by row index, so observations should be in the same order in all data provided.

Usage

icurve(
  mat,
  labels,
  group,
  iscatter1 = NULL,
  iscatter2 = NULL,
  plotOpts = NULL,
  digits = NULL
)

Arguments

mat	a numeric matrix, observations x timepoints
labels	optional character vector or named list of character vectors to label each point; if NULL, points will be labeled by index
group	vector of group (factor-like) variables
iscatter1	a numeric matrix or NULL, nobs x 2
iscatter2	see iscatter1
plotOpts	list of additional plot options; see icurveOpts
digits	integer indicating number of significant digits to use

See Also

iplotCurves from the qtlcharts package

saveWidget

Other iplots: icorr(), idot(), iscatter(), itree()

Examples

## basic usage, no scatter plots
icurve(matrix(AirPassengers, ncol = 12, byrow = TRUE), labels = 1949:1960)

## connecting observations over time with additional linked scatter plots
set.seed(1)
n <- 25
## 25 observations and 5 timepoints
mm <- cbind(runif(n, 0, 10), runif(n, 10, 50), runif(n, 30, 60),
            runif(n, 40, 80), runif(n, 60, 100))
mm <- mm[order(mm[, 5]), ]

## two sets of data (25 obs x 2 columns: id and numeric data)
x1 <- cbind(1:n, kinda_sort(rnorm(n), n / 2))
x2 <- cbind(1:n, kinda_sort(sample(1:100, n), n / 2))

icurve(
  mat = mm, group = 1:25 %% 5 == 0,
  iscatter1 = x1, iscatter2 = x2,
  labels = list(
    Patient = 1:25,
    Disease = sample(c('ALL','CLL'), 25, replace = TRUE)
  ),
  plotOpts = list(
    curves_xlab = 'Response evaluation time point',
    curves_ylab = '% response',
    scat1_xlab = 'Patient', scat1_ylab = 'Lab var 1',
    scat2_xlab = 'Patient', scat2_ylab = 'Lab var 2'
  )
)

raredd/iplotr documentation built on March 19, 2021, 12:45 a.m.